Supplement 1. C++ code and R script files for summary statistics, distance metrics, population simulation, and sequential Monte Carlo algorithm used for parameter estimation of a stochastic stage-structured population model.
收藏Figshare2016-08-10 更新2026-04-29 收录
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https://figshare.com/articles/dataset/Supplement_1_C_code_and_R_script_files_for_summary_statistics_distance_metrics_population_simulation_and_sequential_Monte_Carlo_algorithm_used_for_parameter_estimation_of_a_stochastic_stage-structured_population_model_/3559338
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File List distanceCode.R (MD5: 263965622e4839af0d19193c0cf32195) obsDataC.R (MD5: 0347a95c067dddee0cf34fe286b7ca9c) popSimCodeC_E.R (MD5: 531aafb2d51a23449756138cd8ea994a) simCohortVec.so (MD5: 3ebd32ff70131efa625f378c59e1e46a) SMCcode_E.R (MD5: d7819abf935cec9b4d6f17962eb4fd78) execSMC_C_E.R (MD5: c2583fd6716ac06fb377f75f0fd10e4b) Description We provide functions to compute distances using all candidate summary statistics and distance metrics in distanceCode.R. obsDataC.R is a data file that was used as our "observed" data set. We simulated many data sets using popSimCodeC_E.R. This source file contains both an R function to simulate a data set and an interface to call C++ code simCohortVec.co to simulate a data set. The actual ABC SMC algorithm is coded in a function in SMCcode_E.R.
创建时间：
2016-08-10
