Cast Away in the Adriatic: Low Degree of Parallel Genetic Differentiation in Three-Spined Sticklebacks

This repository incorporates data and scripts associated with the paper "Cast Away in the Adriatic: Low Degree of Parallel Genetic Divergence in Three-Spined Sticklebacks".

Included in the repository are the following compressed folders: 

Moments_models&data.zip: two-population demographic models and SFS to run in moments.

Stairwayplot.zip: blueprint files for multiple mutation rates and results for StairwayPlots.

TreeMix.zip: pipeline to infer population splits and mixture events from allele frequency data using TreeMix, including input files.

VCF.zip: a filtered VCF file for all three-spined stickleback samples.

The scripts for TreeMix and demographic analyses in moments are also available on GitHub.