Cast Away in the Adriatic: Low Degree of Parallel Genetic Differentiation in Three-Spined Sticklebacks

This repository incorporates data and scripts associated with the paper "Cast Away in the Adriatic: Low Degree of Parallel Genetic Divergence in Three-Spined Sticklebacks". Included in the repository are the following compressed folders: Moments_models&data.zip: two-population demographic models and SFS to run in moments. Stairwayplot.zip: blueprint files for multiple mutation rates and results for StairwayPlots. TreeMix.zip: pipeline to infer population splits and mixture events from allele frequency data using TreeMix, including input files. VCF.zip: a filtered VCF file for all three-spined stickleback samples. The scripts for TreeMix and demographic analyses in moments are also available on GitHub.