Genomics of Orchesella dallaii

This repository provides both nuclear and mitochondrial genomic resources, including reference sequences, gene annotations, translated proteome, repeat annotations, and functional annotations.Contents:Nuclear genomeOdallaii_nuclear.fasta → reference nuclear genome sequenceOdallaii_nuclear.gff3 → gene annotation in GFF formatOdallaii_nuclear_softmasked.fasta → soft-masked nuclear genome sequence (repeats masked by RepeatMasker)Mitochondrial genomeOdallaii_mitogenome.fasta → reference mitochondrial genome sequenceOdallaii_mitogenome.bed → gene annotation in BED formatProteomeOdal.proteome.faa → translated proteome (predicted protein amino acid sequences)Functional annotationOdal.eggnogg.annotation.tsv → EggNOG functional annotation of predicted proteinsMasking annotationrepeat_masker_table.out → RepeatMasker output summarizing repeat contentPurposeThis repository is intended as a compact, easily accessible genomic and functional resource for the scientific community.Formats includedFASTA — nucleotide and protein sequencesGFF / BED — genome annotations and coordinatesTSV — functional annotation (EggNOG results)TXT — repeat annotation summary (RepeatMasker output)This repository is part of:Claudio Cucini, Francesco Nardi, Rebecca Funari, Riccardo Bulletti, Antonio Carapelli, Pietro Paolo Fanciulli, Francesco Frati. De novo genome assembly of the endemic Italian springtail Orchesella dallaii (Collembola: Orchesellidae). (Currently under revision).