MERFISH.zip

A zipped file containing all MERFISH data used in the paper. Each folder represents brain MERFISH data from a single mouse at a specific location relative to bregma. Folder names follow the format: <code>experimentID_mouse_genotype[_brainlevel]</code>. Folders ending in <code>53</code> or <code>68</code> correspond to brain sections at bregma +0.145 mm and bregma -1.355 mm, respectively. All other folders correspond to sections at bregma +1.045 mm.Each folder contains files starting with the following prefixes:<code>cell.by.gene</code> or <code>cell_by_gene</code>: digital gene expression matrix with genes as columns, cells as rows, and gene counts as values;<code>cell.metadata</code> or <code>cell_metadata</code>: cell metadata file;<code>CLA.1.cell.IDs</code> and/or <code>CLA.2.cell.IDs</code>: list of claustro-insular cell IDs.MD5 checksum of the zipped file: <code>3ee0f01e8e7b47add35d9d6c4361dd18</code>

本压缩归档文件包含本论文所使用的全部多重误差稳健荧光原位杂交（MERFISH）数据。每个文件夹对应一只小鼠的脑部MERFISH数据，其取材位置相对于前囟（bregma）的坐标确定。文件夹命名遵循如下格式：<code>experimentID_mouse_genotype[_brainlevel]</code>。后缀为<code>53</code>或<code>68</code>的文件夹，分别对应前囟+0.145 mm与前囟-1.355 mm处的脑切片；其余所有文件夹均对应前囟+1.045 mm处的脑切片。每个文件夹内包含以下前缀命名的文件：<code>cell.by.gene</code> 或 <code>cell_by_gene</code>：以基因为列、细胞为行，数值为基因计数的数字基因表达矩阵；<code>cell.metadata</code> 或 <code>cell_metadata</code>：细胞元数据文件；<code>CLA.1.cell.IDs</code> 及/或 <code>CLA.2.cell.IDs</code>：屏状核岛叶细胞（claustro-insular cell）ID列表。本压缩归档文件的MD5校验和为：<code>3ee0f01e8e7b47add35d9d6c4361dd18</code>