Supplemental Material for Buscheet al., 2019

<b>File S1.</b> Per chromosome read coverage distribution of Dwarf Cavendish reads. <b>File S2</b>. Comparison of SNVs in the duplicated segment on the long arm of chromosome 2 to all other SNVs in the genome. The higher read coverage at variants indicates a duplication of this region. <b>File S3</b>. List of public genomic banana sequence read samples used for comparison against Dwarf Cavendish based on the DH Pahang reference. <b>File S4</b>. Coverage plots of public genomic banana sequence read samples (File S1) for comparison against Dwarf Cavendish based on the DH Pahang reference. Samples are: <i>Musa acuminata</i>, <i>Musa acuminata</i> AYP_BOSN_r1, <i>Musa acuminata </i>ssp. banksii, <i>Musa acuminata </i>ssp.<i> </i>burmannica, <i>Musa acuminata</i> Cavendish BaXiJiao, <i>Musa acuminata </i>Gros Michel, <i>Musa acuminata </i>ssp. malaccensis, <i>Musa acuminata</i> Sucrier (Pisang Mas), <i>Musa acuminata</i> Sucrier (Pisang Mas 1998-2307), <i>Musa </i><i>acuminata</i> ssp. zebrina (blood banana), <i>Musa balbisiana</i> Pisang Klutuk Wulung, <i>Musa itinerans</i>, <i>Musa schizocarpa.</i><b><br></b> <b>File S5</b>. List of selected high impact variants between Dwarf Cavendish and DH Pahang with resulting effects predicted by SnpEff.<br><b></b>