遇见数据集

Arabidopsis sepal live-imaging data sets CAT2 and oryzalin

收藏
Zenodo2026-04-15 更新2026-05-26 收录
官方服务:

资源简介:

CAT2 live-imaging data set: These are csv files generated from meshes for various attributes of the cells. The naming system for the files is as follows: Genotype_Replicate_Time Interval_Measure The genotypes are wild type (wt), ftsh4-5 (ftsh4), CAT2oe (CAT2), and ftsh4-5 CAT2oe (ftsh4CAT2). Replicates are numbered 1-3. Time points are named so that t0 is 0hrs, t1 is 24hrs, t2 is 48hrs, and t3 is 72hrs. Two times in the file name indicates the time interval. Oryzalin live-imaging data set: These are csv files generated from meshes for various attributes of the cells. The naming system for the files is as follows: Genotype_Treatment_Replicate_Time Interval_Measure The genotypes are wild type (wt), ftsh4-5 (ftsh4), CAT2oe (CAT2), and ftsh4-5 CAT2oe (ftsh4CAT2). The treatments are mock and oryzalin (ory). Replicates are numbered 1-3 for mock and 1-4 for oryzalin. Time points are named so that t0 is 0hrs, t1 is 24hrs, t2 is 48hrs, and t3 is 72hrs. Two times in the file name indicates the time interval. Fig 4 3-AT treatment microtubules images: These are images of the microtubules from the 3-AT treatment from Fig 4 and S5. It is only the signal from the top of the epidermal cells, and underlying signal was removed using the annihilate function in MorphoGraphX. Files are named as genotype_treatment_replicate. Microtubule screenshots: These are images of the microtubules from the CAT2oe live-imaging from Fig 2 and S2. It is only the signal from the top of the epidermal cells, and underlying signal was removed using the annihilate function in MorphoGraphX. Files are grouped into folders with time interval t0 and t1, and t2 and t3. Files are named as genotype_replicate_time interval. Propyzamide Figure 5 and S6: These are images of the microtubules from the propyzamide experiment from Fig 5 and S6. It is only the signal from the top of the epidermal cells, and underlying signal was removed using the annihilate function in MorphoGraphX. Files are named as date_genotype_replicate_time point. The options for ‘time point’ are before, which is before treatment, and prop, which is after propyzamide treatment. Tubulin6 microtubule marker: These are images of the microtubules from plants the the GFP-TUB6 marker from Fig S3. It is only the signal from the top of the epidermal cells, and underlying signal was removed using the annihilate function in MorphoGraphX. Files are named as genotype_parent insertion line-replicate. Live imaging meshes: These folders contain the MorphographX meshes and MophographX stacks of the microtubule signal for a given replicate from live -imaging (Fig 1 CAT2oe data set). ftsh4 oryzalin: This folder contains the MorphoGraphX meshes and MophographX stacks of the microtubule signal for the ftsh4-5 replicates from the oryzalin live imaging data set. Folders are labeled ftsh4_treatment_replicate and files are named ftsh4_treatment_replicate_time interval. wt oryzalin: This folder contains the MorphoGraphX meshes MophographX stacks of the microtubule signal for the wild type replicates from the oryzalin live imaging data set. Folders are labeled wt_treatment_replicate and files are named wt_treatment_replicate_time interval.

提供机构:
Zenodo
创建时间:
2026-04-15
二维码
社区交流群
二维码
科研交流群
商业服务