EGAS00001001565-sc-20190125 - samples
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下载链接：
https://www.omicsdi.org/dataset/ega/EGAD00001004581
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资源简介：
This includes variant calls (single nucleotide variants and small insertions/deletions) from 8086 (mostly British Pakistani/British Bangladeshi) individuals from the following studies:
1. 3781 British Pakistani/British Bangladeshi adults from East London Genes and Health
2. 2791 British South Asian mothers from Born in Bradford
3. 1428 British South Asian adults from Birmingham
4. 86 individuals (mixed ancestries) from families with rare diseases, from Queen Mary University London
All of the Birmingham and most of the Born in Bradford samples were previously sequenced as part of PMID: 26940866.
Mapping was done with bwa-mem and variant calling was carried out with GATK HaplotypeCaller. We removed variant sites for which the following was true:
SNPs: "QD < 2.0 || FS > 30 || MQ < 40.0 || MQRankSum < -12.5 || ReadPosRankSum < -8.0"
Indels: "QD < 2.0 || FS > 30 || ReadPosRankSum < -20.0"EGA dataset EGAD00001004581
创建时间：
2022-05-11
