kaken2 database of bat genomes for host decontamination
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kraken2 database of bat genomes (chromosomes and mitochondrial sequences only). Used in Nephele pipelines for decontamination of metagenomic datasets from bat host reads. Database is also supplemented with of human genome and is created using no masking Contained assemblies of 9 bat genomes Organism Name Assembly Name Assembly Accession Rhinolophus ferrumequinum mRhiFer1_v1.p GCF_004115265.2 Desmodus rotundus HLdesRot8A.1 GCF_022682495.2 Eptesicus fuscus DD_ASM_mEF_20220401 GCF_027574615.1 Rhinolophus sinicus ASM3656204v1 GCF_036562045.2 Phyllostomus discolor mPhyDis1.pri.v3 GCF_004126475.2 Myotis daubentonii mMyoDau2.1 GCF_963259705.1 Saccopteryx bilineata mSacBil1_pri_phased_curated GCF_036850765.1 Saccopteryx leptura mSacLep1_pri_phased_curated GCF_036850995.1 Pipistrellus nathusii mPipNat.pri GCA_963693515.1



