Select Gene Enrichment p-values.

The complement pathway had a significant number of probe sets that were also in the Cluster 1 positively (over-expressed) correlated (p<0.05 after Bonferroni correction for multiple tests) probe set list. The complement pathway also had a significant number of probe sets that were also in the Cluster 3 negatively correlated probe set list. The chemokine, T-cell, antigen, NF-κB and B-cell pathways were significantly enriched in the positively correlated Cluster 2 probe set list. The chemokine and T-cell pathways were also significantly enriched in the Cluster 1 negatively correlated probe set list and the antigen pathway was significantly enriched in the Cluster 3 negatively correlated probe set list. The embryonic stem cell (ESC) and cell cycle stimulatory (CC+) pathways were significantly enriched in the Cluster 3 positively correlated probe set list as well as the Cluster 1 negatively correlated probe set list.