Proportion of X-linkage for different SNP categories.

P-values for testing whether the median proportion of X-linkage for different SNP categories departs from the expected 0.137, and for testing whether X-linkage differs between SNP categories.
1SNPs are divided into those with a sexually concordant (SCV) and sexually discordant (SDV) effect on gene expression. SDV SNPs are further decomposed onto the categories SDV.M or SDV.F, which represents SNPs with a male- or female-biased effect size.
295% CI of the median proportion of X-linked SNPs.
3Two-tailed P-values (Wilcoxon test) testing if the X-linked proportion differs from 0.137.
495% CI of the difference in the median proportion of X-linkage for SDV SNP category and SCV SNPs
5Two-tailed P-values (Wilcoxon test) testing for a difference in X-linkage between SDV SNP category and SCV SNPs
Note: Not all genes had SNPs that passed the P-value threshold, and some genes had no SNPs which passed the P-value threshold for a certain SNP-class. All trans SNPs N = 133 (SCV), N = 119 (SDV); Intergenic SNPs N = 125 (SCV), N = 116 (SDV); Genic SNPs N = 133 (SCV), N = 118 (SDV); Exon SNPs N = 119 (SCV), N = 110 (SDV); Intron SNPs N = 133 (SCV), N = 118 (SDV).
Proportion of X-linkage for different SNP categories.