Necessary data to run LDeconv toy example
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Reference data for applying LDeconv to the github toy example This repository contains the reference data required to run LDeconv on the toy example provided in the GitHub repository. The example uses real GWAS summary statistics for triglycerides in the APOE region. ToyExample_Triglycerides.csv: a pre-formatted data frame of GWAS summary statistics for triglycerides from the UK Biobank Round 2 analysis, provided as input for the LDeconv toy example. Index_LDeconv.csv: a data frame listing the variants compatible with LDeconv and linking each variant to the corresponding LD inverse matrix. chr19_LD_inv_BD_86: an LD inverse matrix derived from UK Biobank data and used by LDeconv to adjust summary statistics. This matrix corresponds to section 86 on chromosome 19, which includes the APOE region.



