Additional file 14 of Changes in ADAR RNA editing patterns in CMV and ZIKV congenital infections

Additional file 14: Supplementary File 12. Number of (and percent of unmapped) reads that were mapped to the respective viral genomes. Briefly, unmapped reads were collected from the BAM files and mapped to the viral genomes of MCMV and ZIKV using STAR. The following reference genomes were used: NC_075725 (MCMV), KX520666 (ZIKV1), KU866423 (ZIKV2), and KX197192 and MH158236* for human ZIKV dataset, respectively. As expected, the viral reads were found primarily in the infected samples, although their numbers represented only relatively small portions of all sequenced reads. A handful of viral reads were also detected in some uninfected samples, consistent with previously reported results (Lima et al. 2019, Fig. 4C) and the possibility of artifacts of mapping and/or negligible contamination. * MH158236 is a complete genome of JN860885 (FSS13025) ZIKV isolate.