Supplementary Data for the Project Multiomics and quantitative modelling disentangle diet, host, and microbiota contributions to the host metabolome

Supplementary Tables for the Project "Multiomics and quantitative modelling disentangle diet, host, and microbiota contributions to the host metabolome"

Supplementary Table 1. List of 18 genome-sequenced human gut bacteria with metabolic characteristics that were used for community assembly.

Supplementary Table 2. Diet composition.

Supplementary Table 3. Species relative abundance.

Supplementary Table 4. Gene abundance and expression changes.

Supplementary Table 5. Gene pathway enrichment results.

Supplementary Table 6. Metabolomics data.

Supplementary Table 7. Metabolite fold changes, clustering and model parameters.

Supplementary Table 8. Description of the intestinal flux model.

Supplementary Table 9. Enzymatic paths between substrates and products.

Supplementary Table 10. Pearson's correlation coefficients between potential substrates and products, and metagenomics and metatranscriptomic measurements.