Reanalysis of PXD024291

This repository contains a dataset analyzed in "De novo assembled databases allow species-specific protein-based stable isotope probing of microbiomes without prior knowledge of the community composition". Specifically, this repository contains the reanalysis of the protein-SIP data obtained from PXD024174 ("Mock microbial community with spike-ins of 13C-labeled Escherichia coli cells for benchmarking of protein-based stable isotope probing proteomics (Protein-SIP)") that was published in Kleiner M, Kouris A, Violette M, D'Angelo G, Liu Y, Korenek A, Tolić N, Sachsenberg T, McCalder J, Lipton MS, Strous M. Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes. Microbiome. 2023 11(1):24. mztab files originate from Casanovo tsv files originate from PepNet xlsx files originate from merging Unipept and MetaProSIP output