ct-validation benchmark data: parsed genetic evidence and clinical trial datasets
收藏资源简介:
Parsed genetic evidence and clinical trial datasets used to benchmark gene–indication evidence against clinical trial outcomes with ct-validation v0.4.0. Contains harmonised gene-indication tables derived from Open Targets, GWAS Catalog, ClinVar, Genebass, DGIdb, STITCH, ChEMBL and TrialPanorama; the EFO ontology mappings and semantic similarity lookups they are matched through; and the processed Citeline-derived comparator tables from Minikel et al. (2024). Sufficient to run notebooks/benchmark.py end to end without re-downloading upstream sources.Contents are redistributed under the terms of their upstream sources, which differ per file. See DATA_SOURCES.md in the accompanying code repository for per-source licences, versions and download



