Additional file 3: Table S1. of ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass)

Pfam families most represented in ALOMYbase. Table S2. Primers used for RT-qPCR validation of ALOMYbase RNA-Seq expression data. Table S3. Expression patterns of the ALOMYbase contigs that are the most likely homologs of transcripts identified in Arabidopsis thaliana as herbicide response markers allowing to differentiate the action of five herbicides, including four ALS inhihitors (IMAZ, imazapyr; PRIM, primisulfuron; CLOR, clorasulam; SULF, sulfometuron). Table S4. Functional annotation of the 253 contigs up-regulated in all herbicide-treated modalities in both the resistant and the sensitive pools. Table S5. GO Biological Processes significantly enriched in contigs up-regulated in both phenotypes (resistant and sensitive pools) after herbicide application. Table S6. GO Biological Processes significantly enriched in contigs down-regulated in both phenotypes (resistant and sensitive pools) after herbicide application. Table S7. GO Biological Processes significantly enriched in contigs up-regulated after herbicide application only in the sensitive pool. Table S8. GO Biological Processes significantly enriched in contigs down-regulated after herbicide application only in the sensitive pool. Table S9. GO Biological Processes significantly enriched in contigs up-regulated after herbicide application only in the resistant pool. Table S10. GO Biological Processes significantly enriched in contigs down-regulated after herbicide application only in the resistant pool. Table S11. Primers used for RT-qPCR measurement of candidate NTSR contig expression. (XLSX 125 kb)