Additional file 11 of Systematic interrogation of mutation groupings reveals divergent downstream expression programs within key cancer genes
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Additional file 11: Figure S10. Subgrouping behavior replicates across various choices of breast cancer expression datasets. We observed subgrouping classification performance similar to that in METABRIC(LumA) and TCGA-BRCA(LumA) when we repeated our prediction tasks using (a) kallisto TPM expression calls instead of Firehose RSEMs in TCGA-BRCA(LumA), (b) both luminal subtypes present in METABRIC, (c) all nonbasal subtypes present in METABRIC, (d) both luminal subtypes present in TCGA-BRCA (e) all nonbasal subtypes present in TCGA-BRCA.
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2021-05-07
