Additional file 5 of Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus

Maximum likelihood tree file for Ty4 and Tsu4 elements in Saccharomyces sensu stricto species. Newick-formatted file of the maximum-likelihood tree of all full-length Ty4/Tsu4 elements from 16 strains of S. cerevisiae and S. paradoxus plus all complete or nearly-complete Tsu4 elements identified in Saccharomyces WGS assemblies at NCBI. Maximum-likelihood phylogenetic analysis was performed on the multiple alignment in Additional file 4 using RAxML (version: 8.2.4; options -T 28 -f a -x 12345 -p 12345 -N 100 -m GTRGAMMA) [28] excluding positions 1-166 and 6086-6476. (TXT 3.79 kb)