Supplement 1. Data files and code.

File List

SAS.txt

SAS code and example analyses

optimize.txt

Matlab optimization function
(required for remltrend and Sim_model programs)

remltrend.txt

Matlab Analysis code (requires
optimize function)

Sim_model.txt

Matlab simulation and analysis
code (requires optimize function)

Example_Data.txt

Grizzly, Condor, Parrot,
and Whooping Crane data

Staples.zip

All files at once

DescriptionSAS.txt
contains SAS code to perform REML-based analysis described in the original paper
and example analysis of Grizzly, Puerto Rican Parrot, and California Condor
data with notes on output.  Optimize.txt
is a Matlab function to optimize likelihood in toeplitz analysis and is required
for the Matlab programs remltrend
and Sim_model.  Remltrend
performs REML-analysis in Matlab.  Sim_model
simulates time-series and estimates trend, process variance, and sampling error
variance.