PTM-compass workflow

These files serve as the input files required for executing the PTM-Compass workflow (https://github.com/CNIC-Proteomics/PTM-compass). The most common approach to running this workflow is through the Nextflow pipeline (https://github.com/CNIC-Proteomics/nf-PTM-compass). The samples are derived from the study by Bagwan N, Bonzon-Kulichenko E, Calvo E, et al. (*), with results obtained from the open search conducted using MSFragger. test_Heteroplasmic_muscle.zip: Inputs for the PTM-compass test using MSFragger results (open search) for heteroplasmic mouse muscle tissue (*) Bagwan N, Bonzon-Kulichenko E, Calvo E, et al. Comprehensive Quantification of the Modified Proteome Reveals Oxidative Heart Damage in Mitochondrial Heteroplasmy. Cell Rep. 2018;23(12):3685-3697.e4. doi:10.1016/j.celrep.2018.05.080