Convergent genomic signatures of local adaptation across a continental-scale environmental gradient

D.pubescens_T.guttata-pseudochromosomes.cds.gff - Gene annotation of Downy Woodpecker mapped to the pseudochromosome reference genome. D.pubescens_candidates_windows_PC1T.csv - GEA significant windows for PC1 of temperature in D. pubescens D.pubescens_candidates_windows_PC2T.csv - GEA significant windows for PC2 of temperature in D. pubescens D.pubescens_candidates_windows_PC3T.csv - GEA significant windows for PC3 of temperature in D. pubescens D.pubescens_candidates_windows_PC1T.csv - GEA significant windows for PC1 of precipitation in D. pubescens D.pubescens_candidates_windows_PC2P.csv - GEA significant windows for PC2 of precipitation in D. pubescens D.pubescens_candidates_windows_PC3P.csv - GEA significant windows for PC3 of precipitation in D. pubescens D.pubescens_PC1T.rol_win - Per-window median LRT scores for the association with PC1 of temperature in D. pubescens D.pubescens_PC2T.rol_win - Per-window median LRT scores for the association with PC2 of temperature in D. pubescens D.pubescens_PC3T.rol_win - Per-window median LRT scores for the association with PC3 of temperature in D. pubescens D.pubescens_PC1T.rol_win - Per-window median LRT scores for the association with PC1 of precipitation in D. pubescens D.pubescens_PC2P.rol_win - Per-window median LRT scores for the association with PC2 of precipitation in D. pubescens D.pubescens_PC3P.rol_win - Per-window median LRT scores for the association with PC3 of precipitation in D. pubescens D.pubescens_PC1T.permutation.rol_win - Per-window median LRT scores for 200 random permutations of the association with PC1 of temperature in D. pubescens D.pubescens_PC2T.permutation.rol_win - Per-window median LRT scores for 200 random permutations of the association with PC2 of temperature in D. pubescens D.pubescens_PC3T.permutation.rol_win - Per-window median LRT scores for 200 random permutations of the association with PC3 of temperature in D. pubescens D.pubescens_PC1T.permutation.rol_win - Per-window median LRT scores for 200 random permutations of the association with PC1 of precipitation in D. pubescens D.pubescens_PC2P.permutation.rol_win - Per-window median LRT scores for 200 random permutations of the association with PC2 of precipitation in D. pubescens D.pubescens_PC3P.permutation.rol_win - Per-window median LRT scores for 200 random permutations of the association with PC3 of precipitation in D. pubescens D.villosus_candidates_windows_PC1T.csv - GEA significant windows for PC1 of temperature in D. villosus D.villosus_candidates_windows_PC2T.csv - GEA significant windows for PC2 of temperature in D. villosus D.villosus_candidates_windows_PC3T.csv - GEA significant windows for PC3 of temperature in D. villosus D.villosus_candidates_windows_PC1T.csv - GEA significant windows for PC1 of precipitation in D. villosus D.villosus_candidates_windows_PC2P.csv - GEA significant windows for PC2 of precipitation in D. villosus D.villosus_candidates_windows_PC3P.csv - GEA significant windows for PC3 of precipitation in D. villosus D.villosus_PC1T.rol_win - Per-window median LRT scores for the association with PC1 of temperature in D. villosus D.villosus_PC2T.rol_win - Per-window median LRT scores for the association with PC2 of temperature in D. villosus D.villosus_PC3T.rol_win - Per-window median LRT scores for the association with PC3 of temperature in D. villosus D.villosus_PC1T.rol_win - Per-window median LRT scores for the association with PC1 of precipitation in D. villosus D.villosus_PC2P.rol_win - Per-window median LRT scores for the association with PC2 of precipitation in D. villosus D.villosus_PC3P.rol_win - Per-window median LRT scores for the association with PC3 of precipitation in D. villosus D.villosus_PC1T.permutation.rol_win - Per-window median LRT scores for 200 random permutations of the association with PC1 of temperature in D. villosus D.villosus_PC2T.permutation.rol_win - Per-window median LRT scores for 200 random permutations of the association with PC2 of temperature in D. villosus D.villosus_PC3T.permutation.rol_win - Per-window median LRT scores for 200 random permutations of the association with PC3 of temperature in D. villosus D.villosus_PC1T.permutation.rol_win - Per-window median LRT scores for 200 random permutations of the association with PC1 of precipitation in D. villosus D.villosus_PC2P.permutation.rol_win - Per-window median LRT scores for 200 random permutations of the association with PC2 of precipitation in D. villosus D.villosus_PC3P.permutation.rol_win - Per-window median LRT scores for 200 random permutations of the association with PC3 of precipitation in D. villosus D.pubescens_FST_comparisons.zip: PP-<pop1>-<pop2>.50kb-10kbstep.pdf - Manhattan plot of Fst values estimated for 50kb windows (10 kb increments) comparing <pop1> and <pop2> in D. pubescens PP-<pop1>-<pop2>.FST_histogram.pdf - Histogram of Fst values estimated for 50kb windows (10 kb increments) comparing <pop1> and <pop2> in D. pubescens PP-<pop1>-<pop2>.fst_slidingwindow - Fst values estimated for 50kb windows (10 kb increments) comparing <pop1> and <pop2> in D. pubescens PP-<pop1>-<pop2>.outliers_5sd.csv - Outlier Fst windows (>5 standard deviations) for the comparison between <pop1> and <pop2> in D. pubescens PP-<pop1>-<pop2>-candidates.csv - Candidate genes within outlier Fst windows (>5 standard deviations) for the comparison between <pop1> and <pop2> in D. pubescens D.villosus_FST_comparisons.zip: PV-<pop1>-<pop2>.50kb-10kbstep.pdf - Manhattan plot of Fst values estimated for 50kb windows (10 kb increments) comparing <pop1> and <pop2> in D. villosus PV-<pop1>-<pop2>.FST_histogram.pdf - Histogram of Fst values estimated for 50kb windows (10 kb increments) comparing <pop1> and <pop2> in D. villosus PV-<pop1>-<pop2>.fst_slidingwindow - Fst values estimated for 50kb windows (10 kb increments) comparing <pop1> and <pop2> in D. villosus PV-<pop1>-<pop2>.outliers_5sd.csv - Outlier Fst windows (>5 standard deviations) for the comparison between <pop1> and <pop2> in D. villosus PV-<pop1>-<pop2>-candidates.csv - Candidate genes within outlier Fst windows (>5 standard deviations) for the comparison between <pop1> and <pop2> in D. villosus D.pubescens_AK_all_chr_Hscan.rol_win - Median H scores for 50 SNP windows (10 SNP increments) in the Alaska population of D. pubescens D.pubescens_E_all_chr_Hscan.rol_win - Median H scores for 50 SNP windows (10 SNP increments) in the East population of D. pubescens D.pubescens_R_all_chr_Hscan.rol_win - Median H scores for 50 SNP windows (10 SNP increments) in the Rockies population of D. pubescens D.pubescens_NW_all_chr_Hscan.rol_win - Median H scores for 50 SNP windows (10 SNP increments) in the Northwest population of D. pubescens D.villosus_AK_all_chr_Hscan.rol_win - Median H scores for 50 SNP windows (10 SNP increments) in the Alaska population of D. villosus D.villosus_E_all_chr_Hscan.rol_win - Median H scores for 50 SNP windows (10 SNP increments) in the East population of D. villosus D.villosus_R_all_chr_Hscan.rol_win - Median H scores for 50 SNP windows (10 SNP increments) in the Rockies population of D. villosus D.villosus_NW_all_chr_Hscan.rol_win - Median H scores for 50 SNP windows (10 SNP increments) in the Northwest population of D. villosus D.pubescens_PCAdapt.candidates.tsv - Candidate SNP windows for the PCAdapt analysis in D. pubescens D.pubescens_PCAdapt.rol_win - Median p-values of each 50 SNP windows (10 SNP increments) for the PCAdapt analysis in D. pubescens D.villosus_PCAdapt.candidates.tsv - Candidate SNP windows for the PCAdapt analysis in D. villosus D.villosus_PCAdapt.rol_win - Median p-values of each 50 SNP windows (10 SNP increments) for the PCAdapt analysis in D. villosus