Additional file 4 of Contribution of genetic and epigenetic changes to escape from X-chromosome inactivation

Additional file4: Table S4. All XCI status calls made here. See additional files. The first sheet contains a single XCI status call per gene per method. Published calls are from Balaton, et al. 2015. Other sheets contain all calls per sample for each method. Each row is one entry into the model, so Xi/Xa is per gene and the others are for unique transcripts. For DNAme, the samples on the far right in shades of grey are males while the samples on the left in color are females. For the epigenetic predictor, separate low confidence categories were made for when transcripts have only 12-14 of the 20 models per sample predicted a certain XCI status. Start and stop locations are from hg38.