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Supplement 1. Vital rates and projection matrices.

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NIAID Data Ecosystem2026-03-09 收录
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File List survival rates.txt survival variances.txt growth rates.txt growth variances.txt reversion rates.txt reversion variances.txt fruit production rates.txt sigma mu gamma.txt h1.txt h2.txt h3.txt k1.txt k2.txt k3.txt k4.txt k6.txt CC95.txt CC96.txt CC97.txt CC98.txt CC99.txt GU95.txt GU96.txt GU97.txt GU98.txt GU99.txt PA95.txt PA96.txt PA97.txt PA98.txt PA99.txt RG95.txt RG96.txt RG97.txt RG98.txt RG99.txt RI95.txt RI96.txt RI97.txt RI98.txt RI99.txt silene.m   All files at once Description This supplement contains the estimates for all vital rates, the sampling-variation-corrected variances of the survival, growth, and reversion probabilities (i.e., s0 through s12, g3 through g11, and r4 through r12 [see text]), and the compiled projection matrices for all sites and years. These can be downloaded as ASCII files or as MATLAB code, as described below. The following comma-delimited ASCII files contain vital rate estimates. Each has 25 rows, corresponding to the 5 sites in alphabetical order (CC, GU, PA, RG, and RI) and the 5 years nested within site (1995 through 1999): -- TABLE: Please see in attached file. -- Note: all other h and k values are zero.   The following ASCII files contain sampling-variation-corrected variances for survival, growth, and reversion probabilities. Each file has 5 rows, corresponding to the 5 sites in alphabetical order. "-1" indicates that estimates of a rate could not be obtained for each year, so the variance could not be computed. No correction for sampling variation was made for the other vital rates (see text); hence their variances can be computed directly from the raw values. -- TABLE: Please see in attached file. --   The compiled projection matrices are stored in 25 comma-delimited ASCII files, the names of which correspond to the site and year. For example, "CC95.txt" contains the single projection matrix for the CC population in 1995. The file "silene.m" contains MATLAB code that will produce arrays containing the vital rate estimates for each site by year combination, the vital rate means, the vital rate variances (corrected for sampling variation for survival, growth, and reversion probabilities), the annual projection matrices for each site by year combination, and the mean projection matrices for each site. Comments in the MATLAB code describe the structure of each variable created.
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2016-08-10
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