Host-level biodiversity shapes the dynamics and networks within the coral reef microbiome

This is the repository associated with the manuscript Host-level biodiversity shapes the dynamics and networks within the coral reef microbiome. It contains all data files used for figures presented in the manuscript. The code to reproduce the files can be found on GitHub.

Files

raw_host-associated_1.asvs.tsv --> ASV table, host-associated samplesraw_host-associated_2.asvs.tsv --> ASV table, host-associated samplesraw_free-living_1.asvs.tsv     --> ASV table, Sterivex samplesraw_free-living_2.asvs.tsv     --> ASV table, Sterivex samplesmetadata_host-associated.csv   --> metadata, host-associated samplesmetadata_free-living.csv       --> ASV table, Sterivex samplesasv_dat_taxinfo.tsv            --> taxonomy annotated using SILVA v138.1asv_bctab.tsv                  --> square-root transformed Bray-Curtis dissimilarities asv_richtab.tsv                --> Hill number diversity indicesasv_shared.tsv                 --> number of shared ASVspathway_list_cat.csv           --> KEGG pathway list with hand-annotated categoriesKEGG_path_to_ko.tsv            --> KEGG file mapping pathways to KOs