five

Benchmarks of the 5-step pipeline on NA12878 exome (JP protocol).

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https://figshare.com/articles/dataset/_Benchmarks_of_the_5_step_pipeline_on_NA12878_exome_JP_protocol_/1486204
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In elPrep, the combined execution of all preparation steps is faster than running the steps one after the other. The execution of the five-step pipeline in elPrep does not take significantly longer than the execution of the two-step and three-step pipelines (Tables 2 and 3). elPrep executes the full pipeline between six times faster when using a similar amount of RAM as Picard (third column) and ten times faster when given access to all available RAM (fourth column). Benchmarks of the 5-step pipeline on NA12878 exome (JP protocol).
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2015-07-16
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