Supplementary Material: Tables

Tables Legend Table S1. Unionida mitochondrial genomes used in the phylogenetics analysis. Table S2. DNA alignment length before and after using Guidance for each mitochondrial gene used in this study. Table S3. Amino acid alignment length before and after using Guidance for each mitochondrial gene used and the best fit model used in the phylogenetic inference. Residue masking was also applied to the alignments: on average less than 1% of the aligned residues were masked. Table S4. Supporting values for each branch of the four trees generated in this study (ML-DNA, ML-AA, BI-DNA, BI-AA). Table S5. Normalized Robinson and Foulds distances between concatenated mtDNA trees (BI-AA, BI-DNA, ML-AA and ML-DNA) and two-gene trees or single gene trees. The suffixes have the following interpretation: "_AA", gene tree inferred from amino acid sequences; "_P123", gene tree inferred from DNA sequences using all three codon positions; "_P12", gene tree inferred from DNA sequences using all first and second codon positions. Distances highlighted in bold indicate the minimum value recorded for a given category (single gene tree, two-gene tree) relative to a specific concatenated mtDNA tree (columns 2 to 5). Table S6. Mitogenomic features of the F- and M- haplotypes of Unio delphinus.