Agaricales Genomics

Datasets created for Dentinger et al. 2015. Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life. Biological Journal of the Linnean Society. <strong>Contents</strong> Untrimmed Single-Gene Alignments: Raw untrimmed amino acid alignments of 210 single-copy genes from 35 Agaricales taxa, plus 5 five outgroups (relaxed Phylip format). Trimmed Single-Gene Alignments: Trimmed amino acid alignments of 208 single-copy genes from 35 Agaricales taxa, plus 5 five outgroups (relaxed Phylip format). Single-Gene Analyses: Best tree from RaxML analysis single-gene amino acid sequence alignments for 208 single-copy genes from 35 Agaricales taxa plus four outgroups (Newick format). Concatinated Alignment: Final trimmed, concatinated amino acid alignment of 208 single-copy genes from 35 Agaricales taxa, plus 5 five outgroups (relaxed Phylip format) Unpartitioned Analysis: Best tree from unpartitioned RaxML analysis of concatinated alignment of amino acid sequences for 208 single-copy genes from 35 Agaricales taxa plus four outgroups (Newick format). Partition Info for Concatinated Alignment: Partition information for concatinated amino acid alignment of 208 single-copy genes from 35 Agaricales taxa, plus four outgroups. Gene names are based on Coprinopsis cinerea locus IDs Partitioned Analysis: Best tree from partitioned RaxML analysis of concatinated alignment of amino acid sequences for 208 single-copy genes from 35 Agaricales taxa plus four outgroups (Newick format).