Public macrophage proteomics as a protein-support triage filter for transcriptomic tumor-associated macrophage marker programs (code + derived data)

Derived tables, figure source data, analysis scripts, figure manifests, and audit outputs accompanying the manuscript "Public macrophage proteomics as a protein-support triage filter for transcriptomic tumor-associated macrophage marker programs: a feasibility study." The workflow reanalyzes public macrophage RNA (GEO GSE297659) and processed proteomics (MassIVE/ ProteomeXchange MSV000097870/PXD063897; PRIDE PXD032801 and PXD043978) to test which transcriptomic TAM-associated markers retain protein-level detection and directional support. Primary input datasets are public at the listed accessions; the package contains the derived analysis artifacts needed to reproduce the reported findings.