Concerted epithelial and stromal changes during progression of Barrett's Esophagus to invasive adenocarcinoma exposed by multi-scale, multi-omics analysis

Datasets accompanying the publication "Concerted epithelial and stromal changes during progression of Barrett’s Esophagus to invasive adenocarcinoma exposed by multi-scale, multi-omics analysis" (preprint, publication: TBD).

See also the code associated with the paper.

scRNAseq

Data is in `h5ad` format , i.e. count matrices (cells x genes) for 

`EsophagusAtlas_primary_dataset.h5ad`: the primary cohort

`EsophagusAtlas_validation_dataset.h5ad`:the validation cohort

`EsophagusAtlas_primary_and_validation_dataset.h5ad`: primary+validation cohort merged

CODEX

Data is in `h5mu` format, i.e. multiple samples stacked as `modalities`. 28 samples total.