Concerted epithelial and stromal changes during progression of Barrett's Esophagus to invasive adenocarcinoma exposed by multi-scale, multi-omics analysis

Datasets accompanying the publication "Concerted epithelial and stromal changes during progression of Barrett’s Esophagus to invasive adenocarcinoma exposed by multi-scale, multi-omics analysis" (preprint, publication: TBD). See also the code associated with the paper. scRNAseq Data is in `h5ad` format , i.e. count matrices (cells x genes) for `EsophagusAtlas_primary_dataset.h5ad`: the primary cohort `EsophagusAtlas_validation_dataset.h5ad`:the validation cohort `EsophagusAtlas_primary_and_validation_dataset.h5ad`: primary+validation cohort merged CODEX Data is in `h5mu` format, i.e. multiple samples stacked as `modalities`. 28 samples total.