TSENAT SALMON input datasets

This ZENODO repository contains transcript-level quantification results from Salmon (1.10.1) for 16 paired-end RNA-seq samples from the PRJNA737203 study (NCBI BioProject), used in TSENAT package. Dataset Contents: 16 Salmon quantification files (.tsv format) from SRA accessions SRR14800475-SRR14800490RNA-seq data generated from colorectal tissue samples (primary tumors and adjacent normal tissue)Paired-end, strand-unspecific sequencing on Illumina NovaSeq 6000 platform Sample Information: Sample count: 16 samplesTissue type: ColonSample types: 8 tumor samples, 8 adjacent normal tissue samplesRead length: 300 bp (average spot length)Total bases: ~209 billionPlatform: Illumina NovaSeq 6000Library: Paired-end, poly(A) selected cDNA Processing: Quantification against GENCODE v49 transcriptome reference (GRCh38.p14 human genome)Salmon index built with decoy-aware alignmentQuality control performed with FALCOAdapter and quality trimming with Trim Galore (quality threshold: 20, minimum length: 20 bp) Metadata: BioProject: PRJNA737203Study: SRP323863Data provider: Tongji University School of MedicineRelease date: 2022-07-01