Supporting data for seqArchR manuscript

NIAID Data Ecosystem2026-03-14 收录

染色质构象

遗传学数据

数据链接：

https://zenodo.org/record/7692741 数据链接链接失效反馈

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资源简介：

All supporting data and result files for the seqArchR manuscript are provided. Please look at this GitHub repo: https://github.com/snikumbh/reproducible-seqArchR-manuscript for more information.

创建时间：

2023-03-03

NG Capture-C analysis of GADD45a-bound adipogenic super-enhancers

染色质构象

脂肪生成

ING1b and GADD45a are nuclear proteins involved in the regulation of cell growth, apoptosis and DNA repair. We previously found that ING1b is essential to target GADD45a-mediated active DNA-demethylat

NIAID Data Ecosystem70

The embryo-larval and adult parts of the zebrafish major alpha/beta-globin gene locus are functionally and structurally independent. Danio rerio

染色质构象

珠蛋白基因表达调控

We have demonstrated that, in developing Danio rerio, the embryo-larval and adult subloci of the major globin locus acquire stage-specific hyperacetylation of histone H3 and that H3 hyperacetylation p

NIAID Data Ecosystem50

Genome wide SMC1-mediated chromatin looping changes in shBORIS and shLUC resistant Kelly cells.

染色质构象

神经细胞表观遗传学

We performed SMC1-mediated ChIA-PET analysis in both shBORIS and shLUC resistant Kelly cells. Overall design: SMC1 ChIA-PET data from shBORIS and shLUC resistant Kelly cells were generated by deep seq

NIAID Data Ecosystem30

Chromatin structure dynamics of hoxa13a, hoxa13b and hoxd13a loci during zebrafish development.

染色质构象

发育基因调控

We designed 4C-Seq experiments for hoxa13a, hoxa13b and hoxd13a promoters in three developmental stages in zebrafish embryos: 24, 48 and 60 hpf. 4C-seq samples for three different hox13 genes promoter

NIAID Data Ecosystem60

MC-4C: Enhancer hubs and loop collisions identified from single-allele topologies

染色质构象

等位基因互作

Chromatin folding is increasingly recognized as a regulator of genomic processes such as gene activity. Chromosome conformation capture (3C) methods have been developed to unravel genome topology thro

NIAID Data Ecosystem40

Supporting data for seqArchR manuscript

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