SIGnature Attributions (Other Cell Types, I-Z)

Dataset Description

This dataset is designed for use with the SIGnature package, which enables rapid querying of gene sets across many scRNA-seq datasets by leveraging precomputed gene attribution scores. 

Key Details

Cell Type Annotations: The cell types in this dataset were predicted using the SCimilarity package

Included Cell Types:

intestinal tuft cell

ionocyte

keratinocyte

kidney proximal convoluted tubule epithelial cell

luminal cell of prostate epithelium

luminal epithelial cell of mammary gland

lung secretory cell

megakaryocyte

melanocyte

mesothelial cell

mucus secreting cell

myofibroblast cell

paneth cell

parietal epithelial cell

progenitor cell

pulmonary ionocyte

respiratory basal cell

secretory cell

smooth muscle cell

type I pneumocyte

type II pneumocyte

vascular associated smooth muscle cell

File Structure

Each file is compressed and can be extracted with the command “tar -xzf [FILE]”

Within the extracted folder, you will find

Cell Metadata: a compressed CSV file (“cell_metadata.csv.gz”) containing cell-level metadata

Attribution Data: A TileDB object (“attributions”) containing precomputed attributions that are compatible with the SIGnature package.