RefSeq Data & Scripts for ORF dominance

This is the fileset for the article "Protein-coding potential of RNAs measured by open reading frame dominance" by Y.Suenaga, et al.

This fileset consists of the datasets of human (Feb 2015 and April 2018) and 8 spicies given in the article.

[Dataset]
- RefSeq gzipped fasta files (data/RefSeq)
- Scripts to generate open reading frame (ORF) dominance score and other information from RefSeq data. (script)

[How to Run Scripts]
- 1. Unpack a tar.xz file.
- 2. Run script/01_MergeFa.sh.
- 3. Run script/02_ORFdominance.sh.
- 4. Run script/03_Format.sh
Under data/03_Format, you can get NM.txt and NR.txt as the result.

[Note]
- Scripts require Linux, bash, and perl.
- Scripts use randomized data. Consequently, results differ slightly for the same input data.
- Scripts are the same files in "Scripts for ORF dominance" (DOI: 10.6084/m9.figshare.7269518).