Genome assemblies, gene models, gene annotations, taxonomy classifications, clusters, and counts tables

File description:

* .fa.gz - Metagenome-assembled genomes

* .faa.gz - Proteins (Amino-acid space)

* .ffn.gz - ORFs (DNA space)

* .gff.gz - Gene models (GFF3)

* clusters.tsv.gz - [MAG, SLC] identifier mapping (No header)

* taxonomy_classification.tsv.gz - Taxonomy classifications for MAG

* taxonomy_classification.clusters.tsv.gz - Taxonomy classifications for SLC

* genome_quality.tsv.gz - Genome quality assessment

* genome_statistics.tsv.gz - Genome assembly statistics

* identifier_mapping.tsv.gz - [ORF,  contig, MAG] identifier mapping (No header, tab-separated)

* identifier_mapping.orthogroups.tsv.gz - [ORF,  contig, MAG, SLC, SSO] identifier mapping (Includes header, tab-separated)

Abbreviations:

ORF - Open reading frame

MAG - Metagenome-assembled genome

SLC - Species-level cluster

SSO - SLC-specific orthogroup

Citation:

* Espinoza, J.L., Dupont, C.L. VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes. BMC Bioinformatics 23, 419 (2022). https://doi.org/10.1186/s12859-022-04973-8

* Espinoza, Josh (2022): Genome assemblies, gene models, gene annotations, taxonomy classifications, clusters, and counts tables. figshare. Dataset. https://doi.org/10.6084/m9.figshare.20263974.v1