Refined, automatic nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse epididymis (jrc_mus-epididymis-2)

Segmentation description: Nuclei segmentations in jrc_mus-epididymis-2 using Cellpose 2.0 with minimal manual corrections.Software: Cellpose 2.0Software DOI: https://doi.org/10.1038/s41592-022-01663-4GPU: RTX A6000RAM: 256.0 GiBLabel voxel size (nm): 64 x 64 x 64 (x, y, z)Reconstructed data dimensions (µm): 20.9 x 20.5 x 7.0 (x, y, z)Classes annotated: NucleusSource dataset (EM) ID: jrc_mus-epididymis-2Source dataset (EM) voxel size (nm): 4.0 x 4.0 x 4.0 (X, Y, Z)Source dataset (EM) data dimensions (µm): 20.9 x 20.5 x 7.0 (X, Y, Z)Source dataset (EM) DOI: https://doi.org/10.25378/janelia.23407907Dataset URL (redirect): s3://janelia-cosem-datasets/jrc_mus-epididymis-2/jrc_mus-epididymis-2.zarr/recon-1/labels/inference/segmentations/nuc/Visualization website: https://openorganelle.janelia.org/datasets/jrc_mus-epididymis-2