Additional file 2 of Stage-specific transcriptomic analysis reveals insights into the development, reproduction and biological function of allergens in the European house dust mite Dermatophagoides pteronyssinus

.Additional file 2. Stage-dependent expression and annotation data for the whole Dermatophagoides pteronyssinus transcriptome. The spreadsheet is organized in colored panels, from left-to-right: gene reference data in blue (locus ID in ORCAE, description and short name, encoded protein length); RNAseq read count data in green (TPM values and network analysis clustering); pairwise differential expression data in white (fold change and adjusted P-value for each comparison between stages; F, M, N and L denoting females, males, nymphs and larvae, respectively); database-derived annotation data in yellow (protein domains, GO terms, KEGG onthology, OrthoMCL groups, D. melanogaster BLASTp homologs); and, in green, assignment to functional groups and categories described in the main text (in this order: Peptidases, Peptidase inhibitors, Immunity, Cell adhesion and epithelial barrier, Oxidoreductases, Lipases/esterases, Glycosylases, Protein kinases, Transcription factors, Nuclear Receptors, Cytokines and neuropeptides, G Protein-Coupled receptors and cytokine receptors, Small GTPases and associated proteins, Oogenesis-related, Hormone biosynthesis pathways, Chitin metabolism, Cuticular Proteins, Allergen-related proteins, Cytoskeleton-related, and Putative Horizontally Transferred Genes). Each column can be filtered at the user ́s convenience using Microsoft Excel or similar packages.