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root associated fungus metagenome Metagenome

NIAID Data Ecosystem2026-05-17 收录

根际宏基因组

兰科植物共生

数据链接：

https://www.ncbi.nlm.nih.gov/sra/SRP123550 数据链接链接失效反馈

官方服务：

资源简介：

The ITS1 of fungi were amplified and sequenced to study root-associated fungi diversity of orchid, and the primers are ITS5F( 5`-GGAAGTAAAAGTCGTAACAAGG-3`) and ITS1R( 5`-GCTGCGTTCTTCATCGATGC-19`).

应用场景：

创建时间：

2017-11-04

微生物群落

根际宏基因组

Rhizosphere peat soil microbial communities from University of Washington, Seatle, WA, USA

NIAID Data Ecosystem40

EMG produced TPA metagenomics assembly of PRJNA607213 data set (Maize rhizosphere metagenome Metagenome).

根际宏基因组

微生物组

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA607213, and was assembled with metaspades v3.15.3. This project includes samples from th

NIAID Data Ecosystem30

16S rDNA sequence of different protocrom stages of Gymnadenia conopsea Raw sequence reads. Different protocrom stages of Gymnadenia conopsea

植物内生菌群分析

兰科植物共生

Based on 16S rDNA data, we explored the composition of endophytic bacterial communities in the protocorms of Gymnadenia conopsea at different stages of symbiotic germination in the field.

NIAID Data Ecosystem20

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG metagenome

根际宏基因组

生物能源作物

Metagenomic analysis of the rhizosphere of three biofuel crops at the KBS intensive site

NIAID Data Ecosystem40

EMG produced TPA metagenomics assembly of PRJNA789467 data set (Disentangling the genetic basis of rhizosphere microbiome assembly in tomato (metagenomics part)).

番茄研究

根际宏基因组

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA789467, and was assembled with metaSPAdes v3.15.3. This project includes samples from th

NIAID Data Ecosystem30

root associated fungus metagenome Metagenome

资源简介：

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