MERRIN: MEtabolic Regulation Rule INference from time series data (Docker image and notebooks)

This record contains notebooks and Docker image for reproducing the results of the paper "MERRIN: MEtabolic Regulation Rule INference from time series data" published as part of the ECCB 2022 conference. Notebooks can be executed interactively within the Docker image <code>bioasp/merrin:v1</code> which extends the CoLoMoTo Docker version <code>2021-02-01.</code> Also see https://github.com/bioasp/merrin-covert The Docker image can be executed as follows: <pre><code class="language-bash">docker pull bioasp/merrin:v1 docker run -it --rm -p 8888:8888 bioasp/merrin:v1 </code></pre> then point your browser to http://127.0.0.1:8888. The image can be imported using the command <code>docker load</code> with the image file provided in this record: <pre><code>docker load -i image.tar.gz</code></pre> or with the <code>donodo</code> command available at https://github.com/pauleve/donodo: <pre><code>pip install -U donodo donodo pull 10.5281/zenodo.6670165</code></pre>