Genomics of Olea europaea cultivars

The files in this collection are supplemental information for the research article

"Genomics of Olea europaea cultivars and the questionable nature of PCR marker counts",

Richard B. Frost, 2023. Further inquiries can be directed to https://frostconcepts.org/.

CONTENT SIZES

Ax~=b.zip                           8.7 GB

Farga FNA Chromosome Data.zip       141.2 MB

Farga MX Chromosome Data.zip        275.5 MB

Farga TXT Chromosome Data.zip       275.4 MB

Koehmstedt Data.zip                 483.8 KB

Mathematica.zip                     429.5 MB

Merged Data.zip                     19.7 KB

Primer Correlations.zip             12.2 GB

Primer Displacements.zip            17.2 KB

Primer Forms.zip                    126.4 MB

Primer Locations.zip                1.3 GB

Primer Properties.zip               8.6 GB

Profile Data.zip                    90 KB

Profile Distances.zip               369.1 KB

Raw Accession Data.zip              1.7 MB

README.txt                          3.2 KB

SSR Motifs.zip                      7.1 GB

-----------------------------       --------

Total                               39.1 GB

CONTENT FILE TYPES

.zip    zipped folders created by 7-Zip File Manager

.gz     GNU compressed files, can be uncompressed by 7-Zip

.csv    comma separated values file of tabular data

.fna    FASTA format chromosome sequence

.pdf    Adobe PDF

.tsv    tab separated values file of tabular data

.txt    ASCII text

.xlsx   MS Excel worksheet

.m      auto-generated Mathematica package file

.mx     can only be read by Mathematica v.12 or greater on Intel i9 platform

.nb     Mathematica notebook files requiring v.12 or greater

Note 1: several tabular files are too large for input to standard spreadsheet programs.

Note 2: nearly all .mx files have been converted to .tsv files for generic distribution.

Note 3: tabular data files can contain cells with multi-dimension data, delimited

by "{", ",", and "}" characters. Further parsing of these files will be necessary

to use them in 3rd party software.

Note 4: the directory organization for this software is specified in "0000 Olive package".

Note 5: origin of a specific file can usually be found with program "0100 Notebook Text Finder".

Note 6: novice users of Mathematica should not attempt to modify .nb files.

CONTENT ASSOCIATIONS

Folder                              Article section(s)

-----------------------------       -----------

Koehmstedt Data.zip                 1

Raw Accession Data.zip              4.2.a

Profile Data.zip                    4.2.b

Merged Data.zip                     4.2.c

Profile Distances.zip               4.3

Farga FNA Chromosome Data.zip       4.5

Farga MX Chromosome Data.zip        4.5

Farga TXT Chromosome Data.zip       4.5

SSR Motifs.zip                      4.6

Primer Properties.zip               4.7

Primer Correlations.zip             4.8.1

Primer Locations.zip                4.8.1

Primer Forms.zip                    4.8.2.a

Ax~=b.zip                           4.8.2.c

Primer Displacements.zip            n/a

Mathematica.zip                     source code