The R package pcadapt performs genome scans to detect genes under selection based on population genomic data. It assumes that candidate markers are outliers with respect to how they are related to pop
Since domestication, significant genetic improvement has been achieved for many traits of commercial importance in cattle, including adaptation, appearance and production. In response to such intense
Additional file 1: Table S1: Sample information for each chicken (72 individuals) used in this study. Table S2. Chromosome-length and number of detected variants before and after filtering. Table S3.
Additional file 4: Clusters detected by SweepCluster for chromosome 2 variants between EUR-AFR selected at a series of Fst cutoff (0.4, 0.43, 0.45, 0.5, 0.55, 0.6, 0.65, and 0.7).
