kbo paper sources and code for reproducing analyses

kbo paper sources Files - `experiments.tar.gz`: files used to generate the use cases and figures.- `paper.tar.gz`: manuscript files. Manuscript files are also available from GitHub: https://github.com/tmaklin/kbo-paper Changelog 27 May 2025: first public version. References kbo Sequence alignment with k-bounded matching statisticsTommi Mäklin, Jarno N Alanko, Elena Biagi, Simon J PuglisibioRxiv 2025: doi: 10.1101/2025.05.19.654936 Are reads required? dataset Are reads required? High-precision variant calling from bacterial genome assembliesRyan R Wick, Louise M Judd, Timothy P Stinear, Ian R MonkAccess microbiology 2025, doi: 10.1099/acmi.0.001025.v2 Escherichia coli genomes Plasmid-driven strategies for clone success in Escherichia coliSergio Arredondo-Alonso, Anna K Pöntinen, João A. Gama Rebecca A Gladstone et al.Nature communications 2025, doi: 10.1038/s41467-025-57940-1