Additional file 1: of Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication

Table S1. Lists of Arabidopsis thaliana genes in each GO category. Table S2. Variables considered for linear modeling and their sources. Table S3. Parameter Estimation for α WGD Retention Models. Table S4. Parameter Estimation for β WGD Retention Models. Table S5. Parameter Estimation for γ WGD Retention Models. Table S6. Number of experiments, samples, and inferred states from each expression data set. Table S7. Proportion of duplicate pairs with an expression state for each whole-genome duplication event and expression data set. Table S8. Average asymmetry of duplicate pairs across data sets. Table S9. List of experiments in each ATGenExpress dataset. Table S10. List of RNA-Seq Data Sets. Table S11. List of TFs in each Pfam domain family. Table S12. Initial conditions and inferred parameters for ODE models (XLSX 118 kb)