Growth traits of a tropical timber species at Southeast Asia, Shorea macrophylla, and scripts for genome wide association study and genomic prediction

Shorea macrophylla is a commercially important tropical tree species grown for timber and oil. It is amenable to plantation forestry due to its fast initial growth. Genomic selection (GS) has been used in tree breeding studies to shorten long breeding cycles but has not previously been applied to S. macrophylla. To build genomic prediction models for GS, leaves and growth trait data were collected from a half-sib progeny population of S. macrophylla in Sari Bumi Kusuma forest concession, central Kalimantan, Indonesia. 18037 SNP markers were identified in two ddRAD-seq libraries. Genomic prediction models based on these SNPs were then generated for breast height and total height in the 7th year from planting (D7 and H7). These traits were chosen because of their relatively high narrow-sense genomic heritability and because seven years was considered long enough to assess initial growth. Genomic prediction models were built using 12 methods with the full set of identified SNPs and subsets..., CSV file named as \"Pheno_raw.csv\"
This CSV file shows the measured diameter at breast height (from D1 to D12.5) and tree height (from H1 to H12.5) data of 940 Shorea macrophylla progenies which are initially planted in the field. 
CSV file named as \"Pheno_adujusted_rm.csv\"
This CSV file shows the corrected data of diameter at breast height (from D1 to D12.5) and tree height (from H1 to H12.5) data of 360 individuals of the Shorea macrophylla progeny trial from year 1 to 12.5 years after transplanting. The units for diameter at breast height are in centimeters and the units for tree height are in meters. This data has already been corrected by spatial structure analysis., , # Growth traits of a tropical timber species at Southeast Asia, Shorea macrophylla, and scripts for genome wide association study (GWAS) and genomic prediction (GP)

## Description of the data and file structure

CSV file named as \"Pheno_raw.csv\"
This CSV file shows the measured diameter at breast height (from D1 to D12.5) and tree height (from H1 to H12.5) data of 940 Shorea macrophylla progenies which are initially planted in the field.

CSV file named as \"Pheno_adujusted_rm.csv\"
This CSV file shows the corrected data of diameter at breast height (from D1 to D12.5) and tree height (from H1 to H12.5) data of 360 individuals of the Shorea macrophylla progeny trial from year 1 to 12.5 years after transplanting. The units for diameter at breast height are in centimeters and the units for tree height are in meters. This data has already been corrected by spatial structure analysis.

The missing values are shown as \"n/a\". No blank cells are included in the two CSV files.
The missing values ...