Gene count level transcriptomic data of high grade serous ovarian cancer

Transcriptomic profiling was done on 81 primary tumours, 1 relapse tumour, 5 autopsy tumours (whole tissue sections or macrodissected to enrich for tumour), 29 ascites and 7 normal fallopian tube samples. 1 of the primary tumours is a low grade serous ovarian cancer sample. Between 500 ng and 2 μg of total RNA (RNA integrity number >7, except for autopsy samples) was used for library preparation using the TruSeq RNA Sample Preparation v2 kit (Illumina) as per the manufacturer’s instructions using the Low-Throughput protocol. All libraries were sequenced as paired-end 100-bp on a HiSeq2000 instrument (Illumina). **Raw data uploaded to European Genome-phenome Archive (EGA) repository under the accession code EGAD00001000877**