Results of differential expression analysis of transposable elements using RNAseq datasets from wild type and Zfp800 knockout pancreata.
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https://figshare.com/articles/dataset/Results_of_differential_expression_analysis_of_transposable_elements_using_RNAseq_datasets_from_wild_type_and_i_Zfp800_i_knockout_pancreata_/22781149
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RNA-seq reads were aligned to TE database by using random assignment per chromosome and globally. Differential expression analysis was done by using DEseq2. Tabs correspond to “chromosomes”, “global” and “1Mb± Mafb” (1Mb upstream and downstream of Mafb gene) differential expression analysis of TE expression. baseMean: the average of the normalized counts taken over all samples; log2FoldChange: log2 fold change between the compared groups; lfcSE: standard error of the log2FoldChange estimate; stat: Wald statistic; pvalue = Wald test p-value; padj = Benjamini-Hochberg adjusted p-value. (XLSX)
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2023-05-08



