The evaluation of different combinations of enzyme set, aligner and caller in GBS sequencing of soybean

<br>Data and scripts for the paper "The evaluation of different combinations of enzyme set, aligner and caller in GBS sequencing of soybean"<br>GBS soybean libraries for 15 samples with corrsponding tsv files for stacks. ApeKI, PstI-MspI and HindIII-NlaIII enzyme combinations were used. WGS SNPs called with GATK also added for the same set of samples.