lip-quant staurosporine hela report

Analysis reports for DIA-MS data from HeLa lysated samples treated with Staurosporine from PXD015446 (https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD015446) Raw data files were obtained from PXD015446 DDA: HeLa, Staurosporine (10 fractionated samples) DIA: HeLa, Staurosporine (8 conditions x 4 replicates = 32 raw files) Spectronaut Spectral library generated by Pulsa search engine from DDA data DIA-MS report was produced with semi-tryptic digestion option from DIA data MaxQuant Standard analysis results obtained from DDA data MaxDIA analysis results were produced with semi-tryptic digestion, match-between-run options from DIA data Skyline Spectral library imported from Spectronaut (Pulsa search) generated spectral library DIA-MS transition report was produced with semi-tryptic digestion option from DIA data Known target list was obtained from Davis et al. 2011 Nat. Biotechnology.