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Cimex lectularius Genome Annotations v0.5.3

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agdatacommons.nal.usda.gov2023-12-18 更新2025-01-21 收录
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https://agdatacommons.nal.usda.gov/articles/dataset/Cimex_lectularius_Genome_Annotations_v0_5_3/24851913/1
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The Baylor College of Medicine recently sequenced and annotated the Cimex lectularius genome as part of the i5k pilot project. The C. lectularius research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2. The bed bug, Cimex lectularius, is a model organism for understanding dermonecrotic envenomation (sphingomylinase D). A key focus of research to understand neurotic fractions in venom. The bed bug also provides appropriate phylogenetic sampling across diversity of order Araneae. This dataset presents the Cimex lectularius gene set BCM_v_0.5.3, which was generated computationally. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Cimex lectularius genome assembly 1.0. Further annotation method details will be available in a forthcoming publication. NOTE: This gene set is an unstable pre-release (v0.5.3), and was provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use Resources in this dataset:Resource Title: Cimex lectularius genome annotations v0.5.3 for genome assembly Cimex lectularius v1.0. File Name: Cimex_lectularius_BCM_version_0.5.3_annotations.tar_.gzResource Description: The attached tar.gz archive (Cimex_lectularius_BCM_version_0.5.3_annotations.tar.gz) contains the following folders: BCM_version_0.5.3-Primary_Gene_Set. This folder contains evidence files in gff3 format underlying the final gene predictions. BCM_version_0.5.3-Primary_Gene_Set/primary_gene_set. This folder contains the following files: CLEC.CDS.fna.gz. CDS sequences of Cimex lectularius genome annotations v0.5.3. CLEC.faa.gz. Amino acid sequences of Cimex lectularius genome annotations v0.5.3. CLEC.fna.gz. cDNA sequences of Cimex lectularius genome annotations v0.5.3. CLEC.Models.gff3.gz. Gff3 of all gene predictions of Cimex lectularius genome annotations v0.5.3. CLEC.Models-NALmod.gff3.gz. Gff3 of all gene predictions of Cimex lectularius genome annotations v0.5.3, modified by the National Agricultural Library to be compliant with gff3 specifications.

德克萨斯大学医学院近期已完成对床虱(Cimex lectularius)基因组的测序与注释工作,此项目作为i5k试点项目的一部分。床虱作为一种研究皮肤坏死性中毒(鞘氨醇酶D)的模型生物,其研究群体已对计算基因预测结果进行人工审核与整理,并形成了官方基因集OGSv1.2。床虱研究不仅有助于理解毒液中的神经成分,而且提供了跨越蜘蛛目多样性谱系的适当系统发育采样。本数据集展示了由计算生成的Cimex lectularius基因集BCM_v_0.5.3,该基因集利用RNA-Seq数据,并结合额外的蛋白质同源性数据,通过MAKER自动化注释了床虱基因组组装1.0版本。进一步的注释方法细节将在即将发表的出版物中提供。请注意:此基因集为不稳定的前期发布版本(v0.5.3),旨在在官方基因集发布前,便于进行人工整理和分析。此基因集中的基因标识符可能不会被保留。如需使用本数据集,请遵循德克萨斯大学医学院关于数据使用的规定:https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use。本数据集包含以下资源: 资源标题:Cimex lectularius基因组注释v0.5.3,用于Cimex lectularius基因组组装v1.0 文件名:Cimex_lectularius_BCM_version_0.5.3_annotations.tar_.gz 资源描述:所附tar.gz存档(Cimex_lectularius_BCM_version_0.5.3_annotations.tar.gz)包含以下文件夹: BCM_version_0.5.3-Primary_Gene_Set。此文件夹包含支持最终基因预测的gff3格式证据文件。 BCM_version_0.5.3-Primary_Gene_Set/primary_gene_set。此文件夹包含以下文件: CLEC.CDS.fna.gz。Cimex lectularius基因组注释v0.5.3的CDS序列。 CLEC.faa.gz。Cimex lectularius基因组注释v0.5.3的氨基酸序列。 CLEC.fna.gz。Cimex lectularius基因组注释v0.5.3的cDNA序列。 CLEC.Models.gff3.gz。Cimex lectularius基因组注释v0.5.3的所有基因预测的gff3文件。 CLEC.Models-NALmod.gff3.gz。Cimex lectularius基因组注释v0.5.3的所有基因预测的gff3文件,经美国国家农业图书馆修改以符合gff3规范。
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